Bioactivity descriptors for in vivo toxicity prediction: now and the future

02.05.2024

Read our new open access publication by Palle Helmke, Barbara Füzi (former group member) and Gerhard Ecker on improving the drug development process.

Helmke, P., Füzi, B., & Ecker, G. F. (2024). Bioactivity descriptors for in vivo toxicity prediction: now and the future. Expert Opinion on Drug Metabolism & Toxicology, 1–3. 

DOI

https://doi.org/10.1080/17425255.2024.2334308

Abstract

Development of a new drug currently takes 10–12 years with costs of around 2 billion EUR. The two main reasons for failures comprise lack of efficacy and unforeseen toxicity. For the latter, a standard process pursued to minimize the risk is the so-called toxicological read across. Briefly, toxicologists query the available literature and databases for compounds, which are structurally similar to their development candidate in order to retrieve information on potential hazards. In addition, computational models might be applied which are either trained for a single protein, such as hERG or P-glycoprotein, or for a respective in vivo endpoint (cholestasis, steatosis, drug-induced liver injury (DILI), …). In both cases, a proper ‘description’ of the compound of interest is key for the predictive ability of the models. In the following editorial, we will highlight a few general approaches for compound description with a focus on bioactivity-based characterization of compounds.

Funding

This manuscript was funded by the European Union’s Horizon 2020 research and innovation program under grant agreement No. 964537 (RiskHunt3R), and by the Austrian Science Fund, grant number W1232 (MolTag).

Figure 1. Workflow for generating compound/pathway interaction fingerprints.

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