POLθ processes ssDNA gaps and promotes replication fork progression in BRCA1-deficient cells

Author(s)
Anna Schrempf, Sara Bernardo, Emili A Arasa Verge, Miguel A Ramirez Otero, Jordan Wilson, Dominik Kirchhofer, Gerald Timelthaler, Anna M Ambros, Atilla Kaya, Marcus Wieder, Gerhard F Ecker, Georg E Winter, Vincenzo Costanzo, Joanna I Loizou
Abstract

Polymerase theta (POLθ) is an error-prone DNA polymerase whose loss is synthetically lethal in cancer cells bearing breast cancer susceptibility proteins 1 and 2 (BRCA1/2) mutations. To investigate the basis of this genetic interaction, we utilized a small-molecule inhibitor targeting the POLθ polymerase domain. We found that POLθ processes single-stranded DNA (ssDNA) gaps that emerge in the absence of BRCA1, thus promoting unperturbed replication fork progression and survival of BRCA1 mutant cells. A genome-scale CRISPR-Cas9 knockout screen uncovered suppressors of the functional interaction between POLθ and BRCA1, including NBN, a component of the MRN complex, and cell-cycle regulators such as CDK6. While the MRN complex nucleolytically processes ssDNA gaps, CDK6 promotes cell-cycle progression, thereby exacerbating replication stress, a feature of BRCA1-deficient cells that lack POLθ activity. Thus, ssDNA gap formation, modulated by cell-cycle regulators and MRN complex activity, underlies the synthetic lethality between POLθ and BRCA1, an important insight for clinical trials with POLθ inhibitors.

Organisation(s)
Department of Pharmaceutical Sciences
External organisation(s)
Medizinische Universität Wien, IFOM-FIRC Institute of Molecular Oncology, Österreichische Akademie der Wissenschaften (ÖAW), Universität Wien
Journal
Cell Reports
Volume
41
ISSN
2211-1247
DOI
https://doi.org/10.1016/j.celrep.2022.111716
Publication date
11-2022
Peer reviewed
Yes
Austrian Fields of Science 2012
301207 Pharmaceutical chemistry, 301301 Human genetics
Keywords
ASJC Scopus subject areas
Biochemistry, Genetics and Molecular Biology(all)
Sustainable Development Goals
SDG 3 - Good Health and Well-being
Portal url
https://ucris.univie.ac.at/portal/en/publications/pol-processes-ssdna-gaps-and-promotes-replication-fork-progression-in-brca1deficient-cells(125bc53e-8b29-45a1-9a80-ef4b859d9914).html